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Found 301 results
Author
Title
Type
Year
2012
Rickman DS
,
T Soong D
,
Moss B
,
Mosquera JMiguel
,
Dlabal J
,
Terry S
,
MacDonald TY
,
Tripodi J
,
Bunting K
,
Najfeld V
et al.
. 2012.
Oncogene-mediated alterations in chromatin conformation.
.
Proc Natl Acad Sci U S A. 109(23):9083-8.
Elemento O
,
Rubin MA
,
Rickman DS
. 2012.
Oncogenic transcription factors as master regulators of chromatin topology: a new role for ERG in prostate cancer.
.
Cell Cycle. 11(18):3380-3.
Keutgen XM
,
Filicori F
,
Crowley MJ
,
Wang Y
,
Scognamiglio T
,
Hoda R
,
Buitrago D
,
Cooper D
,
Zeiger MA
,
Zarnegar R
et al.
. 2012.
A panel of four miRNAs accurately differentiates malignant from benign indeterminate thyroid lesions on fine needle aspiration.
.
Clin Cancer Res. 18(7):2032-8.
Wacker SA
,
Houghtaling BR
,
Elemento O
,
Kapoor TM
. 2012.
Using transcriptome sequencing to identify mechanisms of drug action and resistance.
.
Nat Chem Biol. 8(3):235-7.
2011
Shaknovich R
,
Cerchietti L
,
Tsikitas L
,
Kormaksson M
,
De S
,
Figueroa ME
,
Ballon G
,
Yang SNing
,
Weinhold N
,
Reimers M
et al.
. 2011.
DNA methyltransferase 1 and DNA methylation patterning contribute to germinal center B-cell differentiation.
.
Blood. 118(13):3559-69.
Giannopoulou EG
,
Elemento O
. 2011.
An integrated ChIP-seq analysis platform with customizable workflows.
.
BMC Bioinformatics. 12:277.
2010
Shaknovich R
,
Geng H
,
Johnson NA
,
Tsikitas L
,
Cerchietti L
,
Greally JM
,
Gascoyne RD
,
Elemento O
,
Melnick A
. 2010.
DNA methylation signatures define molecular subtypes of diffuse large B-cell lymphoma.
.
Blood. 116(20):e81-9.
Velichutina I
,
Shaknovich R
,
Geng H
,
Johnson NA
,
Gascoyne RD
,
Melnick AM
,
Elemento O
. 2010.
EZH2-mediated epigenetic silencing in germinal center B cells contributes to proliferation and lymphomagenesis.
.
Blood. 116(24):5247-55.
Campbell TL
,
De Silva EK
,
Olszewski KL
,
Elemento O
,
Llinás M
. 2010.
Identification and genome-wide prediction of DNA binding specificities for the ApiAP2 family of regulators from the malaria parasite.
.
PLoS Pathog. 6(10):e1001165.
Lieber DS
,
Elemento O
,
Tavazoie S
. 2010.
Large-scale discovery and characterization of protein regulatory motifs in eukaryotes.
.
PLoS One. 5(12):e14444.
Rajadhyaksha AM
,
Elemento O
,
Puffenberger EG
,
Schierberl KC
,
Xiang JZ
,
Putorti ML
,
Berciano J
,
Poulin C
,
Brais B
,
Michaelides M
et al.
. 2010.
Mutations in FLVCR1 cause posterior column ataxia and retinitis pigmentosa.
.
Am J Hum Genet. 87(5):643-54.
2009
Ci W
,
Polo JM
,
Cerchietti L
,
Shaknovich R
,
Wang L
,
Yang SNing
,
Ye K
,
Farinha P
,
Horsman DE
,
Gascoyne RD
et al.
. 2009.
The BCL6 transcriptional program features repression of multiple oncogenes in primary B cells and is deregulated in DLBCL.
.
Blood. 113(22):5536-48.
Lu X
,
Li JM
,
Elemento O
,
Tavazoie S
,
Wieschaus EF
. 2009.
Coupling of zygotic transcription to mitotic control at the Drosophila mid-blastula transition.
.
Development. 136(12):2101-10.
da Piedade I
,
Tang M-HEric
,
Elemento O
. 2009.
DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices.
.
BMC Bioinformatics. 10:388.
Legesse-Miller A
,
Elemento O
,
Pfau SJ
,
Forman JJ
,
Tavazoie S
,
Coller HA
. 2009.
let-7 Overexpression leads to an increased fraction of cells in G2/M, direct down-regulation of Cdc34, and stabilization of Wee1 kinase in primary fibroblasts.
.
J Biol Chem. 284(11):6605-9.
Goodarzi H
,
Elemento O
,
Tavazoie S
. 2009.
Revealing global regulatory perturbations across human cancers.
.
Mol Cell. 36(5):900-11.
2007
Elemento O
. 2007.
Developing a systems-level understanding of gene expression.
.
Genome Biol. 8(4):304.
Elemento O
,
Tavazoie S
. 2007.
Fastcompare: a nonalignment approach for genome-scale discovery of DNA and mRNA regulatory elements using network-level conservation.
.
Methods Mol Biol. 395:349-66.
Elemento O
,
Slonim N
,
Tavazoie S
. 2007.
A universal framework for regulatory element discovery across all genomes and data types.
.
Mol Cell. 28(2):337-50.
De Renzis S
,
Elemento O
,
Tavazoie S
,
Wieschaus EF
. 2007.
Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo.
.
PLoS Biol. 5(5):e117.
2006
Slonim N
,
Elemento O
,
Tavazoie S
. 2006.
Ab initio genotype-phenotype association reveals intrinsic modularity in genetic networks.
.
Mol Syst Biol. 2:2006.0005.
2005
Elemento O
,
Tavazoie S
. 2005.
Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach.
.
Genome Biol. 6(2):R18.
Chan CS
,
Elemento O
,
Tavazoie S
. 2005.
Revealing posttranscriptional regulatory elements through network-level conservation.
.
PLoS Comput Biol. 1(7):e69.
2003
Elemento O
,
Lefranc MPaule
. 2003.
IMGT/PhyloGene: an on-line tool for comparative analysis of immunoglobulin and T cell receptor genes.
.
Dev Comp Immunol. 27(9):763-79.
2002
Elemento O
,
Gascuel O
. 2002.
An efficient and accurate distance based algorithm to reconstruct tandem duplication trees.
.
Bioinformatics. 18 Suppl 2:S92-9.
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