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Rosenquist R
,
Cuppen E
,
Buettner R
,
Caldas C
,
Dreau H
,
Elemento O
,
Frederix G
,
Grimmond S
,
Haferlach T
,
Jobanputra V
et al.
. 2021.
Clinical utility of whole-genome sequencing in precision oncology.
.
Semin Cancer Biol.
Romanel A
,
Zhang T
,
Elemento O
,
Demichelis F
. 2017.
EthSEQ: ethnicity annotation from whole exome sequencing data.
.
Bioinformatics. 33(15):2402-2404.
Romanel A
,
Garritano S
,
Stringa B
,
Blattner M
,
Dalfovo D
,
Chakravarty D
,
Soong D
,
Cotter KA
,
Petris G
,
Dhingra P
et al.
. 2017.
Inherited determinants of early recurrent somatic mutations in prostate cancer.
.
Nat Commun. 8(1):48.
Robinson BD
,
Vlachostergios PJ
,
Bhinder B
,
Liu W
,
Li K
,
Moss TJ
,
Bareja R
,
Park K
,
Tavassoli P
,
Cyrta J
et al.
. 2019.
Upper tract urothelial carcinoma has a luminal-papillary T-cell depleted contexture and activated FGFR3 signaling.
.
Nat Commun. 10(1):2977.
Robinson D
,
Van Allen EM
,
Wu Y-M
,
Schultz N
,
Lonigro RJ
,
Mosquera J-M
,
Montgomery B
,
Taplin M-E
,
Pritchard CC
,
Attard G
et al.
. 2015.
Integrative Clinical Genomics of Advanced Prostate Cancer.
.
Cell. 162(2):454.
Rivas MA
,
Meydan C
,
Chin CR
,
Challman MF
,
Kim D
,
Bhinder B
,
Kloetgen A
,
Viny AD
,
Teater MR
,
McNally DR
et al.
. 2021.
Smc3 dosage regulates B cell transit through germinal centers and restricts their malignant transformation.
.
Nat Immunol. 22(2):240-253.
Rickman KA
,
Lach FP
,
Abhyankar A
,
Donovan FX
,
Sanborn EM
,
Kennedy JA
,
Sougnez C
,
Gabriel SB
,
Elemento O
,
Chandrasekharappa SC
et al.
. 2015.
Deficiency of UBE2T, the E2Â Ubiquitin Ligase Necessary for FANCD2 and FANCI Ubiquitination, Causes FA-T Subtype of Fanconi Anemia.
.
Cell Rep. 12(1):35-41.
Rickman DS
,
T Soong D
,
Moss B
,
Mosquera JMiguel
,
Dlabal J
,
Terry S
,
MacDonald TY
,
Tripodi J
,
Bunting K
,
Najfeld V
et al.
. 2012.
Oncogene-mediated alterations in chromatin conformation.
.
Proc Natl Acad Sci U S A. 109(23):9083-8.
Ricker E
,
Verma A
,
Marullo R
,
Gupta S
,
Ye C
,
Pannellini T
,
Manni M
,
Tam W
,
Inghirami G
,
Elemento O
et al.
. 2020.
Selective dysregulation of ROCK2 activity promotes aberrant transcriptional networks in ABC diffuse large B-cell lymphoma.
.
Sci Rep. 10(1):13094.
Rennert H
,
Eng K
,
Zhang T
,
Tan A
,
Xiang J
,
Romanel A
,
Kim R
,
Tam W
,
Liu Y-C
,
Bhinder B
et al.
. 2016.
Development and validation of a whole-exome sequencing test for simultaneous detection of point mutations, indels and copy-number alterations for precision cancer care.
.
NPJ Genom Med. 1
Rendeiro AFigueiredo
,
Ravichandran H
,
Bram Y
,
Salvatore S
,
Borczuk A
,
Elemento O
,
Schwartz REdward
. 2020.
The spatio-temporal landscape of lung pathology in SARS-CoV-2 infection.
.
medRxiv.
Rendeiro AF
,
Casano J
,
Vorkas CKyriakos
,
Singh H
,
Morales A
,
DeSimone RA
,
Ellsworth GB
,
Soave R
,
Kapadia SN
,
Saito K
et al.
. 2021.
Profiling of immune dysfunction in COVID-19 patients allows early prediction of disease progression.
.
Life Sci Alliance. 4(2)
Rendeiro AF
,
Ravichandran H
,
Bram Y
,
Chandar V
,
Kim J
,
Meydan C
,
Park J
,
Foox J
,
Hether T
,
Warren S
et al.
. 2021.
The spatial landscape of lung pathology during COVID-19 progression.
.
Nature. 593(7860):564-569.
Rendeiro AF
,
Casano J
,
Vorkas CKyriakos
,
Singh H
,
Morales A
,
DeSimone RA
,
Ellsworth GB
,
Soave R
,
Kapadia SN
,
Saito K
et al.
. 2020.
Longitudinal immune profiling of mild and severe COVID-19 reveals innate and adaptive immune dysfunction and provides an early prediction tool for clinical progression.
.
medRxiv.
Reichel J
,
Chadburn A
,
Rubinstein PG
,
Giulino-Roth L
,
Tam W
,
Liu Y
,
Gaiolla R
,
Eng K
,
Brody J
,
Inghirami G
et al.
. 2015.
Flow sorting and exome sequencing reveal the oncogenome of primary Hodgkin and Reed-Sternberg cells.
.
Blood. 125(7):1061-72.
Reichel JB
,
McCormick J
,
Fromm JR
,
Elemento O
,
Cesarman E
,
Roshal M
. 2017.
Flow-sorting and Exome Sequencing of the Reed-Sternberg Cells of Classical Hodgkin Lymphoma.
.
J Vis Exp. (124)
Redmond D
,
Poran A
,
Elemento O
. 2016.
Single-cell TCRseq: paired recovery of entire T-cell alpha and beta chain transcripts in T-cell receptors from single-cell RNAseq.
.
Genome Med. 8(1):80.
Rath P
,
Huang C
,
Wang T
,
Wang T
,
Li H
,
Prados-Rosales R
,
Elemento O
,
Casadevall A
,
Nathan CF
. 2013.
Genetic regulation of vesiculogenesis and immunomodulation in Mycobacterium tuberculosis.
.
Proc Natl Acad Sci U S A. 110(49):E4790-7.
Rajadhyaksha AM
,
Elemento O
,
Puffenberger EG
,
Schierberl KC
,
Xiang JZ
,
Putorti ML
,
Berciano J
,
Poulin C
,
Brais B
,
Michaelides M
et al.
. 2010.
Mutations in FLVCR1 cause posterior column ataxia and retinitis pigmentosa.
.
Am J Hum Genet. 87(5):643-54.
Rai R
,
Yadav SS
,
Pan H
,
Khan I
,
O'Connor J
,
Alshalalfa M
,
Davicioni E
,
Taioli E
,
Elemento O
,
Tewari AK
et al.
. 2019.
Epigenetic analysis identifies factors driving racial disparity in prostate cancer.
.
Cancer Rep (Hoboken). 2(2):e1153.
Rafii S
,
Kloss CC
,
Butler JM
,
Ginsberg M
,
Gars E
,
Lis R
,
Zhan Q
,
Josipovic P
,
Ding B-S
,
Xiang J
et al.
. 2013.
Human ESC-derived hemogenic endothelial cells undergo distinct waves of endothelial to hematopoietic transition.
.
Blood. 121(5):770-80.