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W
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Y
Z
K
Kaya C
,
Dorsaint P
,
Mercurio S
,
Campbell AM
,
Eng KWha
,
Nikiforova MN
,
Elemento O
,
Nikiforov YE
,
Sboner A
. 2021.
Limitations of Detecting Genetic Variants from the RNA Sequencing Data in Tissue and Fine-Needle Aspiration Samples.
.
Thyroid. 31(4):589-595.
Kassambara A
,
Jourdan M
,
Bruyer A
,
Robert N
,
Pantesco V
,
Elemento O
,
Klein B
,
Moreaux J
. 2017.
Global miRNA expression analysis identifies novel key regulators of plasma cell differentiation and malignant plasma cell.
.
Nucleic Acids Res. 45(10):5639-5652.
Kassambara A
,
Herviou L
,
Ovejero S
,
Jourdan M
,
Thibaut C
,
Vikova V
,
Pasero P
,
Elemento O
,
Moreaux J
. 2021.
RNA-sequencing data-driven dissection of human plasma cell differentiation reveals new potential transcription regulators.
.
Leukemia. 35(5):1451-1462.
Kasap C
,
Elemento O
,
Kapoor TM
. 2014.
DrugTargetSeqR: a genomics- and CRISPR-Cas9-based method to analyze drug targets.
.
Nat Chem Biol. 10(8):626-8.
Karass M
,
Bareja R
,
Shelkey E
,
Vlachostergios PJ
,
Robinson BD
,
Khani F
,
Mosquera JMiguel
,
Scherr DS
,
Sboner A
,
Tagawa ST
et al.
. 2019.
Oncogenic Addiction to ERBB2 Signaling Predicts Response to Trastuzumab in Urothelial Cancer.
.
J Natl Compr Canc Netw. 17(3):194-200.
Kansler ER
,
Verma A
,
Langdon EM
,
Simon-Vermot T
,
Yin A
,
Lee W
,
Attiyeh M
,
Elemento O
,
White RM
. 2017.
Melanoma genome evolution across species.
.
BMC Genomics. 18(1):136.
J
Jobanputra V
,
Wrzeszczynski KO
,
Buttner R
,
Caldas C
,
Cuppen E
,
Grimmond S
,
Haferlach T
,
Mullighan C
,
Schuh A
,
Elemento O
. 2021.
Clinical interpretation of whole-genome and whole-transcriptome sequencing for precision oncology.
.
Semin Cancer Biol.
Jiang Y
,
Ortega-Molina A
,
Geng H
,
Ying H-Y
,
Hatzi K
,
Parsa S
,
McNally D
,
Wang L
,
Doane AS
,
Agirre X
et al.
. 2017.
CREBBP Inactivation Promotes the Development of HDAC3-Dependent Lymphomas.
.
Cancer Discov. 7(1):38-53.
Jiang Y
,
Nie K
,
Redmond D
,
Melnick AM
,
Tam W
,
Elemento O
. 2015.
VDJ-Seq: Deep Sequencing Analysis of Rearranged Immunoglobulin Heavy Chain Gene to Reveal Clonal Evolution Patterns of B Cell Lymphoma.
.
J Vis Exp. (106):e53215.
Jiang Y
,
T Soong D
,
Wang L
,
Melnick AM
,
Elemento O
. 2012.
Genome-wide detection of genes targeted by non-Ig somatic hypermutation in lymphoma.
.
PLoS One. 7(7):e40332.
Jiang Y
,
Redmond D
,
Nie K
,
Eng KW
,
Clozel T
,
Martin P
,
Tan LHc
,
Melnick AM
,
Tam W
,
Elemento O
. 2014.
Deep sequencing reveals clonal evolution patterns and mutation events associated with relapse in B-cell lymphomas.
.
Genome Biol. 15(8):432.
Jiang Y
,
Elemento O
. 2014.
Tracing the roots of cancer evolution.
.
Cancer Discov. 4(9):995-7.
I
Israely E
,
Ginsberg M
,
Nolan D
,
Ding B-S
,
James D
,
Elemento O
,
Rafii S
,
Rabbany SY
. 2014.
Akt suppression of TGFβ signaling contributes to the maintenance of vascular identity in embryonic stem cell-derived endothelial cells.
.
Stem Cells. 32(1):177-90.
Iaea DB
,
Spahr ZR
,
Singh RK
,
Chan RB
,
Zhou B
,
Bareja R
,
Elemento O
,
Di Paolo G
,
Zhang X
,
Maxfield FR
. 2020.
Stable reduction of STARD4 alters cholesterol regulation and lipid homeostasis.
.
Biochim Biophys Acta Mol Cell Biol Lipids. 1865(4):158609.
H
Hwang I
,
Pan H
,
Yao J
,
Elemento O
,
Zheng H
,
Paik J
. 2020.
CIC is a critical regulator of neuronal differentiation.
.
JCI Insight. 5(9)
Huang L
,
Fernandes H
,
Zia H
,
Tavassoli P
,
Rennert H
,
Pisapia D
,
Imielinski M
,
Sboner A
,
Rubin MA
,
Kluk M
et al.
. 2017.
The cancer precision medicine knowledge base for structured clinical-grade mutations and interpretations.
.
J Am Med Inform Assoc. 24(3):513-519.
Hess ME
,
Hess S
,
Meyer KD
,
Verhagen LAW
,
Koch L
,
Brönneke HS
,
Dietrich MO
,
Jordan SD
,
Saletore Y
,
Elemento O
et al.
. 2013.
The fat mass and obesity associated gene (Fto) regulates activity of the dopaminergic midbrain circuitry.
.
Nat Neurosci. 16(8):1042-8.
Hatzi K
,
Jiang Y
,
Huang C
,
Garrett-Bakelman F
,
Gearhart MD
,
Giannopoulou EG
,
Zumbo P
,
Kirouac K
,
Bhaskara S
,
Polo JM
et al.
. 2013.
A hybrid mechanism of action for BCL6 in B cells defined by formation of functionally distinct complexes at enhancers and promoters.
.
Cell Rep. 4(3):578-88.
Han T
,
Schatoff EM
,
Murphy C
,
Zafra MPaz
,
Wilkinson JE
,
Elemento O
,
Dow LE
. 2017.
R-Spondin chromosome rearrangements drive Wnt-dependent tumour initiation and maintenance in the intestine.
.
Nat Commun. 8:15945.
Han T
,
Goswami S
,
Hu Y
,
Tang F
,
Zafra MPaz
,
Murphy C
,
Cao Z
,
Poirier JT
,
Khurana E
,
Elemento O
et al.
. 2020.
Lineage reversion drives WNT independence in intestinal cancer.
.
Cancer Discov.
Halama A
,
Kulinski M
,
Dib SS
,
Zaghlool SB
,
Siveen KS
,
Iskandarani A
,
Zierer J
,
Prabhu KS
,
Satheesh NJ
,
Bhagwat AM
et al.
. 2018.
Accelerated lipid catabolism and autophagy are cancer survival mechanisms under inhibited glutaminolysis.
.
Cancer Lett. 430:133-147.
Hajirasouliha I
,
Elemento O
. 2020.
Precision medicine and artificial intelligence: overview and relevance to reproductive medicine.
.
Fertil Steril. 114(5):908-913.
G
Guo C
,
Crespo M
,
Gurel B
,
Dolling D
,
Rekowski J
,
Sharp A
,
Petremolo A
,
Sumanasuriya S
,
Rodrigues DN
,
Ferreira A
et al.
. 2021.
CD38 in Advanced Prostate Cancers.
.
Eur Urol. 79(6):736-746.
Gucalp A
,
Zhou XK
,
Cook ED
,
Garber JE
,
Crew KD
,
Nangia JR
,
Bhardwaj P
,
Giri DD
,
Elemento O
,
Verma A
et al.
. 2018.
A Randomized Multicenter Phase II Study of Docosahexaenoic Acid in Patients with a History of Breast Cancer, Premalignant Lesions, or Benign Breast Disease.
.
Cancer Prev Res (Phila). 11(4):203-214.
Grive KJ
,
Hu Y
,
Shu E
,
Grimson A
,
Elemento O
,
Grenier JK
,
Cohen PE
. 2019.
Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing.
.
PLoS Genet. 15(3):e1007810.
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