ELAVL1 modulates transcriptome-wide miRNA binding in murine macrophages.

TitleELAVL1 modulates transcriptome-wide miRNA binding in murine macrophages.
Publication TypeJournal Article
Year of Publication2014
AuthorsLu Y-C, Chang S-H, Hafner M, Li X, Tuschl T, Elemento O, Hla T
JournalCell Rep
Volume9
Issue6
Pagination2330-43
Date Published2014 Dec 24
ISSN2211-1247
Keywords3' Untranslated Regions, Animals, Base Sequence, Cells, Cultured, ELAV Proteins, ELAV-Like Protein 1, HEK293 Cells, Humans, Macrophages, Mice, Mice, Inbred C57BL, MicroRNAs, Molecular Sequence Data, Transcriptome, Tristetraprolin
Abstract

Posttranscriptional gene regulation by miRNAs and RNA binding proteins (RBP) is important in development, physiology, and disease. To examine the interplay between miRNAs and the RBP ELAVL1 (HuR), we mapped miRNA binding sites at the transcriptome-wide scale in wild-type and Elavl1 knockout murine bone-marrow-derived macrophages. Proximity of ELAVL1 binding sites attenuated miRNA binding to transcripts and promoted gene expression. Transcripts that regulate angiogenesis and macrophage/endothelial crosstalk were preferentially targeted by miRNAs, suggesting that ELAVL1 promotes angiogenesis, at least in part by antagonism of miRNA function. We found that ELAVL1 antagonized binding of miR-27 to the 3' UTR of Zfp36 mRNA and alleviated miR-27-mediated suppression of the RBP ZFP36 (Tristetraprolin). Thus, the miR-27-regulated mechanism synchronizes the expression of ELAVL1 and ZFP36. This study provides a resource for systems-level interrogation of posttranscriptional gene regulation in macrophages, a key cell type in inflammation, angiogenesis, and tissue homeostasis.

DOI10.1016/j.celrep.2014.11.030
Alternate JournalCell Rep
PubMed ID25533351
PubMed Central IDPMC4277505
Grant ListU54-HL117798 / HL / NHLBI NIH HHS / United States
R01 HL049094 / HL / NHLBI NIH HHS / United States
U54 HL117798 / HL / NHLBI NIH HHS / United States
P01 CA077839 / CA / NCI NIH HHS / United States
/ / Howard Hughes Medical Institute / United States
R01-HL49094 / HL / NHLBI NIH HHS / United States